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depower - Power Analysis for Differential Expression Studies

Provides a convenient framework to simulate, test, power, and visualize data for differential expression studies with lognormal or negative binomial outcomes. Supported designs are two-sample comparisons of independent or dependent outcomes. Power may be summarized in the context of controlling the per-family error rate or family-wise error rate. Negative binomial methods are described in Yu, Fernandez, and Brock (2017) <doi:10.1186/s12859-017-1648-2> and Yu, Fernandez, and Brock (2020) <doi:10.1186/s12859-020-3541-7>.

Last updated

4.45 score 62 scripts 231 downloads

rankdifferencetest - Kornbrot's Rank Difference Test

Implements Kornbrot's rank difference test as described in <doi:10.1111/j.2044-8317.1990.tb00939.x>. This method is a modified Wilcoxon signed-rank test which produces consistent and meaningful results for ordinal or monotonically-transformed data.

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3.95 score 30 scripts 232 downloads

bkbase - Package Utility Functions

A collection of package utility functions written in 'base' R.

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2.93 score 1 scripts

bkcheck - Fast and Simple Argument Checks

A collection of functions for argument checking and property-based testing. Designed to be fast, simple, and suitable for most purposes.

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2.40 score

bkmodel - Statistical Modeling Utility Functions

A collection of statistical modeling utility functions.

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2.30 score

vclust - Weighted Clustering of Quantitative and Categorical Variables

Methods for weighted hierarchical clustering of variables. Variables may be quantitative, categorical, or a mixture of both. Following the selection of a cutpoint, the resulting clusters may be summarized by their first principal component score for the purpose of dimensionality reduction.

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2.30 score